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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc064431.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 112aa MW: 13389.6 Da PI: 8.5131 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.9 | 1.1e-12 | 14 | 43 | 14 | 43 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsst 43 +R+++++K A+ELSvLC++ev + +fs++ Itr_sc064431.1_g00001.1 14 ERRKETLFKQAKELSVLCEVEVGIAMFSPS 43 58**************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.521 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.009 | 2 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-14 | 5 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-11 | 7 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
LMMMTESERK RRIERRKETL FKQAKELSVL CEVEVGIAMF SPSEGGGPIV WPSLEEARKR 60 LLEFWALPEV ERVKKMVTHE RVLTDWVNDE MRKIQKRENE VERKEMNVVM NQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171202.1 | 2e-42 | PREDICTED: agamous-like MADS-box protein AGL92 | ||||
TrEMBL | A0A328E579 | 2e-25 | A0A328E579_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31640.1 | 5e-13 | AGAMOUS-like 92 |