PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc054378.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

EIL

Protein Properties

Length: 127aa MW: 14650 Da PI: 10.1866

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc054378.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	174.7	9.9e-54	21	127	1	110
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 eel++rmwkd+++lkr+ker+k ++ a ++ k +++++qa rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g Itr_sc054378.1_g00001.1 21 EELERRMWKDRIKLKRIKERQKVAA--QQ-ASDKLKGKQPTDQATRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSG 103 8****************999744..44.4899999********************************************* PP XXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 87 asdsLraWWkekvefdrngpaais 110 +sd++raWWkekv+fd+ngpaai+ Itr_sc054378.1_g00001.1 104 SSDNIRAWWKEKVKFDKNGPAAIA 127 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.1E-52	21	127	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
DDIRCDNIAE KDVSDEEIEA EELERRMWKD RIKLKRIKER QKVAAQQASD KLKGKQPTDQ 60 ATRKKMSRAQ DGILKYMLKL MEVCKVRGFV YGIIPEKGKP VSGSSDNIRA WWKEKVKFDK 120 NGPAAIA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155618.1	7e-82	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_019155619.1	7e-82	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_019155620.1	7e-82	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_019155621.1	7e-82	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_019155622.1	7e-82	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_019155623.1	7e-82	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	1e-66	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	M1CXJ9	1e-73	M1CXJ9_SOLTU; Uncharacterized protein
STRING	XP_009788577.1	2e-73	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-62	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]