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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc048860.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 82aa MW: 9117.16 Da PI: 8.2237 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 37.2 | 4.3e-12 | 1 | 71 | 298 | 365 |
GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdr 365 vac +e++er+et+++W++rl++ GF+p+++++++ +++++llr++ +g+++ e+s+ ++l Wk+ Itr_sc048860.1_g00001.1 1 VACPPSESVERRETAARWSHRLHAGGFSPASYGDEVCDDVRALLRRYR-EGWSMGqcsgESSAGIFLSWKNS 71 8999*******************************************9.77777656668899999***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.5E-9 | 1 | 71 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 10.992 | 1 | 57 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
VACPPSESVE RRETAARWSH RLHAGGFSPA SYGDEVCDDV RALLRRYREG WSMGQCSGES 60 SAGIFLSWKN SRWCGLVCGS RH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 8e-21 | 1 | 70 | 395 | 463 | Protein SHORT-ROOT |
5b3h_B | 7e-21 | 1 | 70 | 341 | 409 | Protein SHORT-ROOT |
5b3h_E | 7e-21 | 1 | 70 | 341 | 409 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195167.1 | 7e-38 | PREDICTED: protein SHORT-ROOT-like | ||||
Swissprot | A2YN56 | 2e-22 | SHR1_ORYSI; Protein SHORT-ROOT 1 | ||||
Swissprot | Q8H2X8 | 2e-22 | SHR1_ORYSJ; Protein SHORT-ROOT 1 | ||||
TrEMBL | A0A3Q7FD17 | 8e-32 | A0A3Q7FD17_SOLLC; Uncharacterized protein | ||||
TrEMBL | A0A438FBJ0 | 8e-32 | A0A438FBJ0_VITVI; Protein short-root | ||||
TrEMBL | A8R3J0 | 8e-32 | A8R3J0_IPONI; Putative SHORT-ROOT protein | ||||
STRING | Solyc02g092370.1.1 | 1e-32 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 5e-23 | GRAS family protein |
Publications ? help Back to Top | |||
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