PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc035307.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 93aa    MW: 10283.6 Da    PI: 6.245
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc035307.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.42.1e-151282956
                  G2-like 29 PktilelmkvkgLtlehvkSHLQkYRla 56
                             Pk+i+e+m+v+gLt+++vkSHLQkYRl+
  Itr_sc035307.1_g00001.1  1 PKQIREIMNVDGLTNDEVKSHLQKYRLH 28
                             9*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.053130IPR017930Myb domain
TIGRFAMsTIGR015571.6E-12128IPR006447Myb domain, plants
SuperFamilySSF466892.33E-6131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-14132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
PKQIREIMNV DGLTNDEVKS HLQKYRLHVR RLTASPPSST STWPQPYGVV MKPGSPEGPL  60
HLGLPTTCRE VSVTVTGLNA VEESEEEESV RGF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176330.13e-43PREDICTED: myb family transcription factor EFM-like
RefseqXP_019176331.13e-43PREDICTED: myb family transcription factor EFM-like
RefseqXP_019182597.13e-43PREDICTED: myb family transcription factor EFM-like
SwissprotQ9ZQ851e-14EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A438KQU21e-16A0A438KQU2_VITVI; Transcription factor HHO5
TrEMBLA5BDQ71e-16A5BDQ7_VITVI; Uncharacterized protein
TrEMBLF6H7R11e-16F6H7R1_VITVI; Uncharacterized protein
STRINGVIT_07s0197g00060.t012e-17(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.16e-15G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]