PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc014703.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 126aa    MW: 14836.4 Da    PI: 11.238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc014703.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS26.76.4e-0976734116
                     GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiD 116
                              +++p +R+a yf eAL + l++         +p + +      +++a         i kf+hltaNqaI ea+e++  ++HiiD
  Itr_sc014703.1_g00001.1   7 ARRPDERVAYYFSEALYNCLSN---------SPDKRP-----ANFKA---------ISKFAHLTANQAIREATEKAsLKIHIID 67 
                              5566777777777777777776.........222222.....12222.........67*****************97899**** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.2E-6767IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MRLRFPARRP DERVAYYFSE ALYNCLSNSP DKRPANFKAI SKFAHLTANQ AIREATEKAS  60
LKIHIIDPER VKVESLLLGW RKSPVPHLTR RRLTKATRFR EVCGVKEMDR RLRFEITKLS  120
LHLTLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.17e-11GRAS family protein