 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc013001.1_g00001.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
MYB_related |
| Protein Properties |
Length: 226aa MW: 25641.8 Da PI: 8.6739 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc013001.1_g00001.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60 | 5.2e-19 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eEd+l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
Itr_sc013001.1_g00001.1 10 RGNFTPEEDDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MNYLRPGIKR GNFTPEEDDL IVRLHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLLKKLK 60
SEGIEPKPRK ASRTIPKKKK TAKPDKTGSE KRKKHRPVSK PDVKDRPEMI KVYAPRPVRL 120
STGFARNYSF DDLAASVASS SGNNKAEDNN NTPLNHNGNN NKAEESTGFP WDLYEVGDDL 180
FDDYMDGCDL TARYSLPTSD TLLEKVYDEY LQLLSEDCCL QTCSSC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1a5j_A | 4e-14 | 2 | 59 | 51 | 108 | B-MYB |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 77 | 93 | KKKTAKPDKTGSEKRKK |
