PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc012729.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 190aa MW: 20487.2 Da PI: 8.4909

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc012729.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.4	8.9e-42	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r ++++slvyeA++r+rdPvyG++g i++lqqq Itr_sc012729.1_g00001.1 20 PCAACKLLRRRCTQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPERQRAETANSLVYEANVRLRDPVYGCMGAISALQQQ 105 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 ++ l+ael+++++e Itr_sc012729.1_g00001.1 106 VQALQAELNAVRAE 119 ********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.548	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-42	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MGRRPPPPPS PGGTLNTITP CAACKLLRRR CTQECPFSPY FSPHEPHKFA SVHKVFGASN 60 VSKMLMEVPE RQRAETANSL VYEANVRLRD PVYGCMGAIS ALQQQVQALQ AELNAVRAEI 120 MRYKFGEATN NDINTIPSSH HHHHASSLLS SGVVSVAAPP PSSASLYTPP PSSSAADFGI 180 VSSENISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	8	127	3	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	8	127	3	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019200204.1	1e-118	PREDICTED: LOB domain-containing protein 15-like isoform X1
Swissprot	Q9AT61	1e-68	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A200QQC5	4e-86	A0A200QQC5_9MAGN; Uncharacterized protein
TrEMBL	A0A218WC16	6e-86	A0A218WC16_PUNGR; Uncharacterized protein
STRING	EOY20040	2e-85	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-60	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]