PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc006580.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YA

Protein Properties

Length: 209aa MW: 23222.6 Da PI: 8.3736

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc006580.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	52	2.3e-16	170	204	1	36
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep++VNaKQy++Il+RRq+Rak+e+ekkl +++rk Itr_sc006580.1_g00001.1 170 EEPVFVNAKQYHGILRRRQSRAKAESEKKL-HRNRK 204 69****************************.66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.9E-6	168	209	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	19.563	169	209	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.4E-12	171	204	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	174	194	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MLFLQIARNS ISCRRAILQF SSFRTCYESL LLGVLHCSLV IVLRSGREMS VVNSGDFAFL 60 VISAMTSSDH DLSDNSETGQ HENQSSPPSQ VMPHPGTVAP TMPSGILPQL GNGNAMAQTA 120 YPYPDPYYRS IFAPYETQPY PQCFPAQSMV HLQLMGVQQA GVPLPSDAVE EPVFVNAKQY 180 HGILRRRQSR AKAESEKKLH RNRKVCCLH

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178940.1	6e-93	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_019178941.1	6e-93	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_019178942.1	6e-93	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	6e-41	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2R6RG32	7e-62	A0A2R6RG32_ACTCH; Nuclear transcription factor Y subunit A-7 like
TrEMBL	M1AUU2	4e-62	M1AUU2_SOLTU; Uncharacterized protein
STRING	VIT_10s0003g04650.t01	2e-62	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-43	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]