PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006382.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family RAV
Protein Properties Length: 334aa    MW: 37539.4 Da    PI: 10.1694
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006382.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.7e-134896155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s++kGV   + +grW A+I++      +kr++lg+f  ++eA +a++ a+++++g
  Itr_sc006382.1_g00001.1 48 SKFKGVVPQP-NGRWGAQIYEK-----HKRVWLGTFNEEDEAGRAYDVAAQRFRG 96
                             79****9888.8*********3.....5**********99*************98 PP
2B3103.21.5e-32167263192
                              EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                              f+k+ tpsdv+k++rlv+pk++ae++        + +++ l led++g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v 
  Itr_sc006382.1_g00001.1 167 FEKAVTPSDVGKLNRLVIPKQHAEKYlplptTTTTSKGILLNLEDKKGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDVVS 252
                              89*************************999855666999*********************************************** PP

                              EEE-SSSEE.. CS
                       B3  82 Fkldgrsefel 92 
                              F+++  ++++l
  Itr_sc006382.1_g00001.1 253 FRRSTGQDKRL 263
                              **775555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-84896IPR001471AP2/ERF domain
CDDcd000182.97E-2448103No hitNo description
SuperFamilySSF541712.16E-1648104IPR016177DNA-binding domain
SMARTSM003801.2E-2749110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-1949104IPR001471AP2/ERF domain
PROSITE profilePS5103219.49349104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.9E-42159272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-32164267IPR015300DNA-binding pseudobarrel domain
CDDcd100176.02E-28165256No hitNo description
PfamPF023622.2E-29167264IPR003340B3 DNA binding domain
PROSITE profilePS5086315.213167269IPR003340B3 DNA binding domain
SMARTSM010191.1E-26167269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSSRTNENS CSTSVAPPST SIISPAEPLS RLGSGITEVE SARKLPSSKF KGVVPQPNGR  60
WGAQIYEKHK RVWLGTFNEE DEAGRAYDVA AQRFRGRDAL TNFKPLSETE DNAELSFLRS  120
RSKAEIVDML RKHTYADELS RQRSLEYCDE TEGNNNKKMG EEGERLFEKA VTPSDVGKLN  180
RLVIPKQHAE KYLPLPTTTT TSKGILLNLE DKKGKVWRFR YSYWNSSQSY VLTKGWSRFV  240
KEKGLRAGDV VSFRRSTGQD KRLYIDQKPR SGAHWPPAQQ PPVKTVRLFG VNICSSSSNT  300
VPPVSSNGGR KRIGETELLL PLECSKKQRV IDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5816427311120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168375.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9ZWM91e-128RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLW8CWZ41e-137W8CWZ4_OLEEU; Tempranillo
STRINGGorai.008G185900.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-129related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]