PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc006004.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 201aa MW: 22907 Da PI: 8.1214

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc006004.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F r +++ H H Itr_sc006004.1_g00001.1 103 YECQFCPKVFDRLTSYTWHVGIH 125 99*****************7655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.17E-6	55	125	No hit	No description
SMART	SM00355	100	56	78	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.03	103	125	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.995	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
VNSTAIVTYI APEMHGEDGV NNTAIVTYIA PEMHGEEILP EGTDNPVGGV QIHDRYYCDF 60 CKIGFNERTE FARRRKFHGK TRSGGYWNQP PLTDGMIMKD GKYECQFCPK VFDRLTSYTW 120 HVGIHLRRNL KGSSTSIEAA PRAAKTYYGK DPRGARVRFR PRAYSSVGNL RLLSEFLMRD 180 EEEELANLRL MSEVSERCIC G

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19