PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005517.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 325aa    MW: 36834.9 Da    PI: 5.3329
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005517.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.39.4e-4230128199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l + e+++am++++ye+++ra dPv G++++i++lq+q
  Itr_sc005517.1_g00002.1  30 ACAACKYQRRKCASDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLTPPEKDEAMRTIIYESDMRAIDPVGGCYRIIRQLQRQ 115
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallke 99 
                              +eq++ael+++ +
  Itr_sc005517.1_g00002.1 116 IEQSQAELDVVLH 128
                              ********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.48229130IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3930126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNIINNNNNN NNIIPKNNNI IISRTNGSQA CAACKYQRRK CASDCILAPY FPHDRQRQFL  60
NAHKLFGVSN ITKIIRHLTP PEKDEAMRTI IYESDMRAID PVGGCYRIIR QLQRQIEQSQ  120
AELDVVLHHL AYCRAQAAGD SVSLPNNNVN THRDVIDQTA ADVVVVNNNF GALREEWYDY  180
EQQPSNVNVN VNVNNGYPHP HHYPHYNQPQ FLVVQNNGDH RDDYHHHPVV DQTNVAAAWE  240
MHARDSKPPP PSSVVVPTSQ LSQDTDNACD SIKPILDLSG YVEDLNFGPE ETLEESEEVL  300
VKEQDKAAAL NEEEESLSNM LKIMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-28251455127LOB family transfactor Ramosa2.1
5ly0_B1e-28251455127LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196357.11e-159PREDICTED: LOB domain-containing protein 22
SwissprotQ9LRW14e-51LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A328DJF81e-82A0A328DJF8_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-46LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]