PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005209.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 299aa    MW: 34383.9 Da    PI: 10.1447
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005209.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.2e-22953145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             k i+n  +r vtf kR++g+ KKA+ELS+LCd++v++i+++++g+
  Itr_sc005209.1_g00001.1  9 KLISNRKRRFVTFQKRKKGLEKKAYELSTLCDVKVCLIMYGPKGN 53
                             569****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-23161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.866152IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-23298IPR002100Transcription factor, MADS-box
CDDcd001204.37E-24253No hitNo description
PRINTSPR004045.1E-15323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-201153IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRRKIELKL ISNRKRRFVT FQKRKKGLEK KAYELSTLCD VKVCLIMYGP KGNTENQTLE  60
PNIWPENPEF VCSMIESYQN QVESNKKIRT QDLSTFYDNL AKKAECERVK KLHERKNGVN  120
AVNAVKYPTW DERFNRLSAC ELRNVISELD VKVKASKERI DLLKGKRITV SPQKPDPPPP  180
PPLVSRRLVG TSIQQTSYNI NPSMINPVPY HLRHDGRHLL AAAEVMVTKN RVTMTKVEPM  240
PSSLLSCAQP AAEMRPYLQN LPPPAPVPYS WNLPAAVIPY GQYQWMHYSD NVMRSGYYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216RRKIELKLISNRKRR
21325RKRRFVTFQKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189701.11e-155PREDICTED: agamous-like MADS-box protein AGL82
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.17e-22AGAMOUS-like 82