PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005074.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 370aa    MW: 41522.8 Da    PI: 6.9977
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005074.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07140160526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C++f++ G C+ Gd C FaHg
  Itr_sc005074.1_g00001.1 140 ACPDFRK-GNCRKGDLCEFAHG 160
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.07187124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864135162IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6135161IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5140160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4167197IPR000571Zinc finger, CCCH-type
SMARTSM0035611170193IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.366170194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMIGERNLPN PTVLVPPWLS HDQTANIHFV SSPSGNVNFN DDASQFLQYD AVLQALQRYL  60
PSNANSNDAA VMMGEFDSDN DKDIEFPVDA YACDNFRMYD FKVRKCARGR SHDWTECPFA  120
HPGEKARRRD PRKYRYSGTA CPDFRKGNCR KGDLCEFAHG VFECWLHPAR YRTQPCKDGL  180
KCKRRVCFFA HSPEQLRVLS PRADASCAKT LHFVLSSPES GSPPSESPPM SPMNSLGTNS  240
MVASLRQLQL NKVKSMPSSS WSLHMLGSPR LPLTRSAGFC SLPTTPTRSL SRPGVCNFDL  300
WEKGLCEEKE EEEEEVPMER VESGRDLRAK MLEKLSKENP LDAVEAGSNP THNPSYAPSP  360
DLGWVSDLVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175738.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-115C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3Y1A11e-167A0A1S3Y1A1_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009608132.11e-168(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-105C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]