PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004911.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 356aa MW: 39542.9 Da PI: 10.4095

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004911.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.3	1.1e-14	63	151	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W+++ + +Liea e+ +l+rg+lk+++W+++++ + +++ +s +qCk++++ ++k++k +k+ + + s++++ Itr_sc004911.1_g00002.1 63 CWSESATAVLIEAWGERYLELSRGNLKQKHWKDIAEIVngrgeDFTKIPKSDIQCKNRIDTVKKKFKLEKAKISAG--HGPSKWAF 146 7***********************************88666666678899***************99997..45567* PP trihelix 82 fdqle 86 fd+++ Itr_sc004911.1_g00002.1 147 FDKMD 151 ****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.1E-24	61	151	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEDNEEMRSR DSSASPPASP RSDGRIAVTV AVSAPPQGGS KALAVALPVQ QQSKAAGGGR 60 EDCWSESATA VLIEAWGERY LELSRGNLKQ KHWKDIAEIV NGRGEDFTKI PKSDIQCKNR 120 IDTVKKKFKL EKAKISAGHG PSKWAFFDKM DWLIGPAAAK IAGSAEPPVN HKVPMGIPMG 180 ARSAPPLRQH QPSPPPQKPK HAFDRKPPAA YSDSSDSETE GSADSFPPAT NDRKRPRIDR 240 REFMNSSFVK PEIQRSIGIG TGIGNEKHQN WGKSMGELSE AIVKFGEAYE RTESARIQQM 300 VEMEKQRMKF AKEMELQRMQ FFMKTQMDLS QLHNRNRPIK KANKNTAIIK NTGNIN

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEDNEEMRSR DSSASPPASP RSDGRIAVTV AVSAPPQGGS KALAVALPVQ QQSKAAGGGR  60
EDCWSESATA VLIEAWGERY LELSRGNLKQ KHWKDIAEIV NGRGEDFTKI PKSDIQCKNR  120
IDTVKKKFKL EKAKISAGHG PSKWAFFDKM DWLIGPAAAK IAGSAEPPVN HKVPMGIPMG  180
ARSAPPLRQH QPSPPPQKPK HAFDRKPPAA YSDSSDSETE GSADSFPPAT NDRKRPRIDR  240
REFMNSSFVK PEIQRSIGIG TGIGNEKHQN WGKSMGELSE AIVKFGEAYE RTESARIQQM  300
VEMEKQRMKF AKEMELQRMQ FFMKTQMDLS QLHNRNRPIK KANKNTAIIK NTGNIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196999.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	1e-86	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A0V0I8Y8	1e-115	A0A0V0I8Y8_SOLCH; Putative trihelix transcription factor GTL1-like
TrEMBL	M1DFW4	1e-115	M1DFW4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400088401	1e-116	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10332	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	9e-83	sequence-specific DNA binding transcription factors