PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc004898.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GATA

Protein Properties

Length: 158aa MW: 18201.5 Da PI: 9.1118

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004898.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.7	3.2e-18	94	128	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C t +Tp+WR gp g+ tLCnaCG++y++ +l Itr_sc004898.1_g00003.1 94 CSHCETEDTPQWRMGPMGPNTLCNACGVRYKSGRL 128 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.6E-15	88	142	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.24E-13	90	149	No hit	No description
Gene3D	G3DSA:3.30.50.10	4.2E-15	92	126	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.793	92	124	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.93E-14	93	144	No hit	No description
Pfam	PF00320	4.8E-16	94	128	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	94	119	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MAIENSDGDA KSIGLCVPPD SLDDLDFFPN FSDDFISITD LLLFSTPEKE TVQDESQNEK 60 RKRCYKPARS KTGEGRRRRY NNNPNNCGWK KRKCSHCETE DTPQWRMGPM GPNTLCNACG 120 VRYKSGRLVP QYRPLASPTF DSSKHSNFHR KIMQHRRV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	92	RRRYNNNPNNCGWKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019184148.1	4e-86	PREDICTED: GATA transcription factor 12-like
Swissprot	P69781	2e-34	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A484NJ35	8e-52	A0A484NJ35_9ASTE; Uncharacterized protein
STRING	XP_006432141.1	5e-41	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1154	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	6e-34	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]