PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004867.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 266aa    MW: 29446.1 Da    PI: 6.1726
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004867.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.81.9e-101966249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              ie +  r+vtfskR+ +++ KA+     ++a +a+ ++ss+g ++ +
  Itr_sc004867.1_g00001.1 19 LIECENARSVTFSKRKRTLFEKAKRAAASTNATIAIFLISSKGYMHAF 66
                             5788899**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.4231070IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-121069IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-151184IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-81232IPR002100Transcription factor, MADS-box
PfamPF003192.2E-92066IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-83247IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-84768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEGEPERKHK GRQKIEMKLI ECENARSVTF SKRKRTLFEK AKRAAASTNA TIAIFLISSK  60
GYMHAFGTSC VHAIINAYRA RRSNDNAPIA VAQNDDHRLD LLNGDPVDKL KQILECQDVS  120
VLLGPNFDPS NLDHVMAAYS WFDDCCTKLK AKKEKQMSAN RVANEQMVST NVGAAQFDLN  180
VTTAASPNQV FISANLARGF NLNVAPSADD EEMISAASHV RRFNLNVTTG ADDDKEAEEK  240
EEMAHANPTR GFNLNVAPDD VDEEMK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160724.11e-132PREDICTED: MADS-box protein FLOWERING LOCUS C-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.17e-13MIKC_MADS family protein