PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc004786.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

BES1

Protein Properties

Length: 310aa MW: 35455.9 Da PI: 9.2452

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004786.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	35.7	3.1e-11	10	38	14	42
DUF822 14 nnkrRERrRRaiaakiyaGLRaqGnyklp 42 + RER RRa +a++ GLR++Gny+l+ Itr_sc004786.1_g00001.1 10 EKQIRERERRAFTARMIDGLRQHGNYNLR 38 3467************************8 PP
2	DUF822	88	2.3e-27	72	163	2	94
DUF822 2 gsgrkptwkErEnnk.rRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 ++ +++t++E+ RER+RRa ++++ aGLR++Gny+lp+ a +n+Vl A eAG++v+++Gttyr p+++ aa s + Itr_sc004786.1_g00001.1 72 SGNKSRTEREKQMEHmIRERKRRAFTTQMIAGLRQHGNYNLPAGASMNQVLVAVVSEAGYTVDANGTTYR--PPPPSNVVAADSLK 155 67899999999876526*****************************************************..22223333333334 PP DUF822 87 saspessl 94 + s+++s+ Itr_sc004786.1_g00001.1 156 NWSTSASV 163 44444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.2E-8	9	38	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Pfam	PF05687	3.7E-25	73	175	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.27E-43	174	307	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	3.5E-24	175	304	IPR001554	Glycoside hydrolase, family 14
Gene3D	G3DSA:3.20.20.80	5.5E-50	175	308	IPR013781	Glycoside hydrolase, catalytic domain
PRINTS	PR00750	3.3E-7	185	199	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.3E-7	206	224	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSPNPQPKRE KQIRERERRA FTARMIDGLR QHGNYNLRSL PNSKPSNDHE RNSNPNPQPA 60 RTRMGDNAAS TSGNKSRTER EKQMEHMIRE RKRRAFTTQM IAGLRQHGNY NLPAGASMNQ 120 VLVAVVSEAG YTVDANGTTY RPPPPSNVVA ADSLKNWSTS ASVLRIDESL SPASSDSLVL 180 LKSLNIDGVV VNCWWGIVER LKNQKYEWSG YRELFDIIRD MELKLQVVMA FNAYTGNDFN 240 VDIPLPEWVL KIGKDSPEIF FTDRVGRWNI DCLSWGIDKE PILEHRTGQE VYYEFMRSFR 300 AEFNDLFTAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1fa2_A	1e-31	176	310	38	173	BETA-AMYLASE
5wqu_A	1e-31	176	310	38	173	Beta-amylase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	11	PQPKREKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019173590.1	1e-100	PREDICTED: beta-amylase 8-like
STRING	XP_004164169.1	7e-64	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6204	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	2e-60	beta-amylase 2