PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004345.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 876aa    MW: 96465.7 Da    PI: 6.7436
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004345.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-183088357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Itr_sc004345.1_g00001.1 30 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 88
                             6789*****************************************************97 PP
2START173.31.5e-541783852204
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a ra+g+v  +++  v+e+l+d++ W ++++  ++l v+ +
  Itr_sc004345.1_g00001.1 178 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAGRACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLSVLPT 262
                              68999*****************************************************.8888888888***************** PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              g  g+++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s++  p+     s+vRae+lpSg+li+p+++g+s +++v
  Itr_sc004345.1_g00001.1 263 GngGTIELIYMQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTSKTGGPSgapATSFVRAEMLPSGYLIRPCEGGGSIIHIV 348
                              *****************************************************999999*************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              +hvdl++++++++lr+l++s+ + ++k+++a+l++ +
  Itr_sc004345.1_g00001.1 349 DHVDLDAWSVPEVLRPLYESSKILVQKMTMAALRHIR 385
                              *********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-20788IPR009057Homeodomain-like
PROSITE profilePS5007115.712589IPR001356Homeobox domain
SMARTSM003898.6E-162793IPR001356Homeobox domain
PfamPF000463.3E-163088IPR001356Homeobox domain
CDDcd000861.45E-163090No hitNo description
SuperFamilySSF466892.57E-163092IPR009057Homeodomain-like
CDDcd146863.83E-682121No hitNo description
PROSITE profilePS5084825.706168396IPR002913START domain
CDDcd088751.11E-69172388No hitNo description
SMARTSM002341.6E-50177387IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-21177382IPR023393START-like domain
SuperFamilySSF559612.88E-37178389No hitNo description
PfamPF018523.1E-52178385IPR002913START domain
PfamPF086704.0E-45676814IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MALVMHRESS NSGGSNSSGK HQQQQMDSSK YVRYTPEQVE ALERVYAECP KPSSLRRQQL  60
IRECPILSNI EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV  120
SQLVYENGYM RNQLHTVNTT TTDTSCESVV VSGQQQQQNP TPQHPQRDAN NPAGLLAIAE  180
ETLAEFLGKA TGTAVDWVQM IGMKPGPDSI GIVAVSRNCS GVAGRACGLV SLEPTKVAEI  240
LKDRPSWYRD CRCLDVLSVL PTGNGGTIEL IYMQTYAPTT LASARDFWTL RYTTSLEDGS  300
LVICERSLTS KTGGPSGAPA TSFVRAEMLP SGYLIRPCEG GGSIIHIVDH VDLDAWSVPE  360
VLRPLYESSK ILVQKMTMAA LRHIRQIAQE TSGEIQYSGG RQPAVLRALS QRLCRGFNDA  420
VNGFVDDGWT VLGSDGVEDN VPPALLVRFL REHRSEWADY GVDAYSAASL KASPYAVPCA  480
RPGGFPSSQV ILPLAQTVEH EEFLEVVRLE GHAFSPEDIA LSRDMYLLQL CSGIDENAAG  540
ACAQLVFAPI DESFGDDAPL LPSGFRVIPL EPKSDAPGTT RTLDLASTLE AGNGGSTRPP  600
GGEVESNNNY NLRSVLTIAF QFTFENHYRD NVAAMARQYV RSIVSSVQRV AMAIAPSQLS  660
SNLTPRPLPG SPEAITLARW ICRSYRMHTG NELLQLESQA GDAVLKQLWH HSDAIMCCSV  720
KMNASAVFTF ANQAGLDLLE TTLLALQDIM LDKILDEAGR KVLVSEFSKI MQQGFAYLPA  780
GICVSSMGRP VSYEQAVAWK VLNDDDTNHC LAFMDHLASN WVVGGIVEFR STRFRLRTGT  840
GTVRAVPVPV RFVQYPVRFE PDGSNRTVVI PKQRLH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178964.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S4CPX60.0A0A1S4CPX6_TOBAC; homeobox-leucine zipper protein ATHB-14-like isoform X1
TrEMBLA0A1U7WKU80.0A0A1U7WKU8_NICSY; homeobox-leucine zipper protein ATHB-14-like isoform X1
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]