PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004336.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 19835.4 Da PI: 6.9456 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.1 | 2e-07 | 3 | 50 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie + r+vtfskR+ ++ A+ ++a +a+ ++ss+g ++ + Itr_sc004336.1_g00001.1 3 LIECENARSVTFSKRKIILFENAKRAAASTGATIAIFLISSKGYMHAF 50 5788899**************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.049 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-9 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-8 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKLIECENAR SVTFSKRKII LFENAKRAAA STGATIAIFL ISSKGYMHAF GTSCVHPIIN 60 EYRARHSNDN VAIAVAQNDG HRLDLLNGDP VDKLKQILEC QDVSFLLGPN FDRSNLEHVI 120 AAYSWFVHMI SVASHVRRFN LNVTPAAYDD KEAEEEETAC ANPTRGFNLN AAPTSHGYV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160724.1 | 2e-75 | PREDICTED: MADS-box protein FLOWERING LOCUS C-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 1e-08 | M-type_MADS family protein |