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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004224.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | EIL | ||||||||
Protein Properties | Length: 657aa MW: 74405.4 Da PI: 6.6795 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 64.2 | 3.8e-20 | 507 | 620 | 177 | 278 |
--HHHHHHT.--TT--...----..-GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS EIN3 177 kelwwgelg.lskdqg..tppyk..kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257 + w el+ +s+++ + yk p lk + kv+vL vi+hms ++++ir+l+rqsk+lq++m+ake +lls l++ e+ c Itr_sc004224.1_g00001.1 507 THCWALELAqTSTSTTleVRNYKwfAPMKLKHVLKVGVLIVVIRHMSSDFAKIRKLVRQSKCLQNRMTAKENLILLSALRRMEASC 592 55565555555555555577787556999********************************************************* PP --XXXXXX.......XXXXXXXXXXXXX CS EIN3 258 atvsahss.......slrkqspkvtlsc 278 ++ s +r ++++ +s+ Itr_sc004224.1_g00001.1 593 SEIGLGSTsealvsvPVRPNKRSSCVSD 620 *998875434554443344444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05970 | 2.9E-37 | 252 | 411 | IPR010285 | DNA helicase Pif1-like |
SuperFamily | SSF52540 | 2.65E-6 | 319 | 351 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52540 | 2.65E-6 | 385 | 426 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF04873 | 1.1E-14 | 507 | 587 | No hit | No description |
SuperFamily | SSF116768 | 1.7E-15 | 531 | 590 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene3D | G3DSA:1.10.3180.10 | 6.2E-18 | 532 | 593 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003678 | Molecular Function | DNA helicase activity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
VIHKSYRDAC YEYGLLDDDK EYIDGITNSS YWASASALRR LFATLLSSST ISRPEVIWDA 60 VWEFLAEDAQ FHHRRRMNNL DSDKKQFALV ELEKLLSLWG KSLRDFPQMP LPDETNIGFE 120 DSKTRRPEDS KTRRHEDPKT RRREDTKTWI LGQNREGPRF HNRAIKCDIH KLTKHYLVLF 180 GSSCELKEGK LKNSKVGDLS TYSTISTSEV ERGGVNLEEV EKPTTTKLPG LVIKGACCIE 240 AHQELKTTDL SLEEDKQTVD WFSKWIANIG YGITGVVNNG LSEIDIPPRF LLNCGHDLIA 300 TIVEITFPSA RYGMIDELDL EGRAILSPTL DVVDQINQYM CNMNTAEGRT YLSCDSFCKA 360 ESDGENLSQV NTPEFLNSLR LSGLPNHSLI LKVGAPVMLL RNIDHSLGLC NVSVQHNCSI 420 NHDYGLQCIV YHGPRYNNCN DWATINDSGQ RYKTKGIKIN QQSISFCFKI TSSIILSKNA 480 FHFRFFWCCC WITSSDEVEY DNAWLGTHCW ALELAQTSTS TTLEVRNYKW FAPMKLKHVL 540 KVGVLIVVIR HMSSDFAKIR KLVRQSKCLQ NRMTAKENLI LLSALRRMEA SCSEIGLGST 600 SEALVSVPVR PNKRSSCVSD LNSEECDVNG FDDDVLESAS FRDDQSGNQQ GYKGTGM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27050.1 | 1e-14 | ETHYLENE-INSENSITIVE3-like 1 |