PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003923.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 526aa    MW: 59379.1 Da    PI: 7.4956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003923.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.23.6e-1041645214374
                     GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                              lL  cA+av  +d++ +++lL r++ ++sp+g + +Rl +yf++AL arla+++  ly a       + + +++l+a+++++ ++P
  Itr_sc003923.1_g00002.1 164 LLNLCAQAVGGEDFRTVNELLGRIRRHCSPHGGAAERLSHYFAKALDARLAGTGAALYTAN------RASLADTLKAYQMYFTACP 243
                              7889************************************************766666433......2347889************ PP

                     GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                              + k+s++ a + I + + +++++HiiDf+is+G+QWp+L+q L+ Rp+gpp lRiTg++      + e  +tg+ L+ + ++++vp
  Itr_sc003923.1_g00002.1 244 FKKLSNMFADKSIGKLTMEATKIHIIDFGISHGFQWPCLIQGLSRRPGGPPALRITGIDL-----NAEATATGRHLSYYSNKFNVP 324
                              ************************************************************.....78999**************** PP

                     GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                              f++++ v+k++e++  e+ r++++E+l+Vn+ ++l+ ++de +s es+rd+vL+++k+l+P+v+ +    a++n+  F +rf ea+
  Itr_sc003923.1_g00002.1 325 FQYTA-VTKKWETICSEDVRIERDEVLVVNCLYRLQDVPDEIASEESPRDTVLNFIKQLNPQVFMHGVVSASYNALVFSTRFREAI 409
                              *****.7******************************************************************************* PP

                     GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                               ++s+lfd+le +++  +e r+++Ere+lgrei+nvvacegaer +r et+++W+er+++aGF+++  + +++ q+++ +  +++d
  Itr_sc003923.1_g00002.1 410 FHFSSLFDMLEGTVGGGDEGRMVYEREILGREIMNVVACEGAERMKRPETYKQWQERIQRAGFEQMLPDGDIMRQVRAKVMDYSND 495
                              ************************************************************************************77 PP

                     GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                               + vee+ +++++gWk+r ++++S+W+
  Itr_sc003923.1_g00002.1 496 -FFVEEDGKWMLQGWKGRVIYATSSWK 521
                              .*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.194135502IPR005202Transcription factor GRAS
PfamPF035141.2E-101164521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDHKANNPSS SNYNYFQGVL DYINQMLMED DDLENGRFVY PDLLALQAAE KSLGDVLNAE  60
ESSGNDGGRR FPDRPGEKRH RCGEDINGVE AGRRRRSNNN NNVARDEEQV QIEMYNGIKG  120
LCYCRELDAS AKRVVQPRVR ARRGRPRAGE RGGNGKGEVD FAGLLNLCAQ AVGGEDFRTV  180
NELLGRIRRH CSPHGGAAER LSHYFAKALD ARLAGTGAAL YTANRASLAD TLKAYQMYFT  240
ACPFKKLSNM FADKSIGKLT MEATKIHIID FGISHGFQWP CLIQGLSRRP GGPPALRITG  300
IDLNAEATAT GRHLSYYSNK FNVPFQYTAV TKKWETICSE DVRIERDEVL VVNCLYRLQD  360
VPDEIASEES PRDTVLNFIK QLNPQVFMHG VVSASYNALV FSTRFREAIF HFSSLFDMLE  420
GTVGGGDEGR MVYEREILGR EIMNVVACEG AERMKRPETY KQWQERIQRA GFEQMLPDGD  480
IMRQVRAKVM DYSNDFFVEE DGKWMLQGWK GRVIYATSSW KPVINH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5016852226380Protein SCARECROW
5b3h_A2e-5016852225379Protein SCARECROW
5b3h_D2e-5016852225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159708.10.0PREDICTED: scarecrow-like protein 11
SwissprotQ9XE581e-136SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2G9I6E21e-169A0A2G9I6E2_9LAMI; Uncharacterized protein
STRINGMigut.D02076.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-136SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]