PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003864.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 400aa    MW: 45197.8 Da    PI: 6.3801
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003864.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.4e-1765117456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++++ ++q++ Le+ Fe ++++  e++ +LA+klgL  rqV +WFqNrRa+ +
  Itr_sc003864.1_g00001.1  65 KRRLLPDQVHFLERSFEVENKLEPERKLHLAQKLGLHPRQVAIWFQNRRARNR 117
                              4567899********************************************98 PP
2HD-ZIP_I/II120.21e-3863153191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl  +qv++LE+sFe e+kLeperK +la++Lgl+prqva+WFqnrRAR +tkq+Ek++++Lk++yd+l++e +++++e+++
  Itr_sc003864.1_g00001.1  63 EKKRRLLPDQVHFLERSFEVENKLEPERKLHLAQKLGLHPRQVAIWFQNRRARNRTKQIEKEFDSLKASYDKLTSEFDAISQENDK 148
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr++ 
  Itr_sc003864.1_g00001.1 149 LRHQT 153
                              *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1758120IPR009057Homeodomain-like
PROSITE profilePS5007116.63359119IPR001356Homeobox domain
SMARTSM003898.5E-1862123IPR001356Homeobox domain
CDDcd000865.24E-1564120No hitNo description
PfamPF000461.5E-1465117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-1771118IPR009057Homeodomain-like
PRINTSPR000314.9E-59099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000314.9E-599115IPR000047Helix-turn-helix motif
PfamPF021831.9E-12119156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEVGDLRTNI LQTHKFPPSS DVLDSLWISD SKPSFHGPAS MVNFDGLQEA RLEKEEISRS  60
NGEKKRRLLP DQVHFLERSF EVENKLEPER KLHLAQKLGL HPRQVAIWFQ NRRARNRTKQ  120
IEKEFDSLKA SYDKLTSEFD AISQENDKLR HQTSRLLVSA QQFLSHRVLD LPFTGFHPTI  180
LHLHPTIPQP PNAELPLQTS AQQSPNHRVL DFPFTGLSPT PGARLAFTSL RATILQLHPT  240
IPSHWRLDLA FTGLHPRIPQ PLEKLKSKEK VDDQITSFEA EPQKQQPIAG TILADRKALS  300
ITVCKQEDAS SAKSDVLDSD SPHCTDGIGN QFLEPADSSH VLESSDFSQD EDDGLPPNLF  360
HTLSFPKLED HLQQIPANSC NLGFSISDHS PWFWTSGLVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167193.14e-84PREDICTED: homeobox-leucine zipper protein ATHB-54-like
TrEMBLA0A1S4CS324e-49A0A1S4CS32_TOBAC; homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1U7YRP94e-49A0A1U7YRP9_NICSY; homeobox-leucine zipper protein HAT5-like
STRINGXP_009801495.16e-50(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-37homeobox 1