PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003837.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 809aa    MW: 89723.9 Da    PI: 7.776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003837.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.63.2e-20253352198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F
  Itr_sc003837.1_g00004.1 253 FEKVLSASDAGRIGRLVLPKACAEAYfpYINHSEGIPIKMQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTF 337
                              99**************************555667888***************9989999999***9.******************* PP

                              EE-SSSEE..EEEEE- CS
                       B3  83 kldgrsefelvvkvfr 98 
                              ++++  e++lv+++++
  Itr_sc003837.1_g00004.1 338 SRID-PEGKLVMGFRK 352
                              *987.77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-30249362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-21250354IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-25251352No hitNo description
SMARTSM010191.8E-21253353IPR003340B3 DNA binding domain
PfamPF023622.3E-17253352IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307253354IPR003340B3 DNA binding domain
PROSITE profilePS5105012.258478556IPR011124Zinc finger, CW-type
PfamPF074961.1E-8483517IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MDLGGIGCLS CARRLGGQAL RPIEVPTDDV PSGILAMKNN ADTQPIRVEN RMDGNIFDKG  60
RLLQLGKSIE AREPIKLFKS QNDDKIKTEE PTIPAVEVMS CFPNLNQQSL RTSVLEKAEN  120
CIPKQAVKDT PDSFNQPSLN FSLSTPTSTS SSVLPFPSGV GKISPFQQGQ KPHHILPKPP  180
KAGSNLGFES KSGISTPTRV ARPPAEGRGG RNQLLPRYWP RITDQELQKL SGDPLCFTFT  240
VTLSLKSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP YINHSEGIPI KMQDIKGKEW  300
TFQFRFWPNN NSRMYVLEGV TPCIQNMQLQ AGDTVTFSRI DPEGKLVMGF RKATNNAEMQ  360
VSQNSTPANG GCSTEIPLSG ATNNHTKNGG RETDKPLQRN VLSPEKKKVR NIGCKNKRLL  420
MHSEDAMELR ITWEEAQELL RPPPTVNPTI VVIENQEFEE YDEPPVFGKR TIFTSLSSGE  480
HGQWAQCDNC SKWRRLPVHV LLPANWTCSD NVWDSNRHQA RVLPPNGLLS QRDLPFTILY  540
PVWLGCSCSA PNEMNQKELD AFLRVSKVKF ETFSCPETKR RRIIESSNEG EPSGLDALAT  600
VAVLGESISE LGEPSAGATT KHPRHRPGCT CIVCIQPPSG KGKHEPTCKC NVCLTVRRRF  660
KTLMLRKKKK QSERELELAQ GKDELPRKDG SDMDHAAAVN EPGSIPMNHP ENDAYQNEDR  720
HDAMETSKGQ LDLNCHPNRE DDMQPEEASG MCMPSLVNTA DLPSRVYNLA MMTGKAQTAE  780
ETKGKQSKHP DDRHITPAET KSENEPAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-642203602131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1578582KRRRI
2656667RRRFKTLMLRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267263e-39AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBankHG9755183e-39HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178804.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_019178805.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
TrEMBLA0A484LV760.0A0A484LV76_9ASTE; Uncharacterized protein
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-176high-level expression of sugar-inducible gene 2