PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003816.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 351aa MW: 39179.5 Da PI: 7.1423

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003816.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.7	4.7e-21	59	151	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rWt+ e+l+Lie+++ e+r + g ++kp+W+ vs++ ++ g++r+p+qC+++w+nl ++kki+++e + ++e+ s + Itr_sc003816.1_g00001.1 59 RWTRPETLVLIEGKKIAEDRKGCGTssvlgcaQIKPKWDLVSSYSKQNGVNRGPVQCRKRWSNLISDFKKIRTWELQVKEERDSYW 144 8************88888886533466666******************************************999999 PP trihelix 80 pyfdqle 86 + ++l+ Itr_sc003816.1_g00001.1 145 MMMNDLR 151 9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-5	51	124	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.899	52	123	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-9	58	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MKGLLDTVRS VEVTELNVMA SGSIEMNKNV LSSTSSIVLG EQLPNEVLDE KNKTSRHPRW 60 TRPETLVLIE GKKIAEDRKG CGTSSVLGCA QIKPKWDLVS SYSKQNGVNR GPVQCRKRWS 120 NLISDFKKIR TWELQVKEER DSYWMMMNDL RKVRKLPGFF DREIYDVLKG KAFIEAKHQL 180 AVVTLGTDVN NGHHMETGEG GDEAQQVLGS GHHKIADSGM LSDFEPTPQW NGDDSTEEGI 240 TPDKPTITIP SPVSISGTAK GEQSGSHFWK GPPLQEGVKR RRLFSDCCEN SNLEDCLAKV 300 MERNGNMLNA ELEARNMNVQ LDRKQCKEQS ESLVAALNKI GDALVRIADK L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MKGLLDTVRS VEVTELNVMA SGSIEMNKNV LSSTSSIVLG EQLPNEVLDE KNKTSRHPRW  60
TRPETLVLIE GKKIAEDRKG CGTSSVLGCA QIKPKWDLVS SYSKQNGVNR GPVQCRKRWS  120
NLISDFKKIR TWELQVKEER DSYWMMMNDL RKVRKLPGFF DREIYDVLKG KAFIEAKHQL  180
AVVTLGTDVN NGHHMETGEG GDEAQQVLGS GHHKIADSGM LSDFEPTPQW NGDDSTEEGI  240
TPDKPTITIP SPVSISGTAK GEQSGSHFWK GPPLQEGVKR RRLFSDCCEN SNLEDCLAKV  300
MERNGNMLNA ELEARNMNVQ LDRKQCKEQS ESLVAALNKI GDALVRIADK L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	282	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168802.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X5
TrEMBL	A0A161XEP3	1e-109	A0A161XEP3_DAUCS; Uncharacterized protein
STRING	XP_009773262.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-69	Trihelix family protein