PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003728.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family EIL
Protein Properties Length: 441aa    MW: 49839.2 Da    PI: 5.5236
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003728.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3377.32.5e-115313312285
                              XXXXXXXXXXXXXXXXXXXXXX..XXXXX.........XXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa........tgakksn........ksneqarrkkmsraQDgiLkYMlkemevcnaqG 71 
                              elkkrmwkd+m++++lk  k+++ ++ e +             s+          +eq+rrkkmsr+QD+iLkYM+k+mevc+aqG
  Itr_sc003728.1_g00002.1  31 ELKKRMWKDRMRMQKLKAAKRRNDAAGEDDdcvlmdedS----SSsssaadaaAKQEQSRRKKMSRSQDSILKYMVKIMEVCKAQG 112
                              9****************9999876655555788855431....33456677779******************************** PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHS CS
                     EIN3  72 fvYgiipekgkpvegasdsLraWWkekvefdrngpaaisky.....qaknlilsgesslqtersseshslselqDTtlgSLLsalm 152
                              fvYgi+pekgkpv+g+sdsLr+WWke v+f++n+paai++          ++++ + +l+  +ss    l++ qDTtlgS+Lsalm
  Itr_sc003728.1_g00002.1 113 FVYGIVPEKGKPVTGSSDSLRGWWKETVKFEQNAPAAIAEFlpklvS-SAAAAAAAADLHDPSSSLVYLLQDFQDTTLGSMLSALM 197
                              ****************************************9776542.2233333334434466777889**************** PP

                              SSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT- CS
                     EIN3 153 qhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkm 238
                              qhc ppqrrfplekg++pPWWP+Gkelwwg++gl+++qg+ppy+kphdlkkawkvsvL+a ikhms + +++r+l+ qs+ lq+km
  Itr_sc003728.1_g00002.1 198 QHCAPPQRRFPLEKGLAPPWWPSGKELWWGHQGLAQEQGPPPYRKPHDLKKAWKVSVLAAIIKHMSHDTDRMRRLVKQSRILQNKM 283
                              ************************************************************************************** PP

                              -SHHHHHHHHHHTTTTT-S--XXXXXX.XXXXXXXXXXXXXXXXXXXX CS
                     EIN3 239 sakesfallsvlnqeekecatvsahss.slrkqspkvtlsceqkedve 285
                              +ake++++++v+ qee++++  +   + s+ +++++  +s+ +k + +
  Itr_sc003728.1_g00002.1 284 TAKETATWAKVVDQEEALLNLTHKALNiSTPDDDKQKSISQTSKLRTR 331
                              *****************9987777744333334444444444443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.0E-11331299No hitNo description
Gene3DG3DSA:1.10.3180.102.2E-64175306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167685.75E-56179302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MVEIYDEELS PESEIMEVEE EEEEQEVSYH ELKKRMWKDR MRMQKLKAAK RRNDAAGEDD  60
DCVLMDEDSS SSSSAADAAA KQEQSRRKKM SRSQDSILKY MVKIMEVCKA QGFVYGIVPE  120
KGKPVTGSSD SLRGWWKETV KFEQNAPAAI AEFLPKLVSS AAAAAAAADL HDPSSSLVYL  180
LQDFQDTTLG SMLSALMQHC APPQRRFPLE KGLAPPWWPS GKELWWGHQG LAQEQGPPPY  240
RKPHDLKKAW KVSVLAAIIK HMSHDTDRMR RLVKQSRILQ NKMTAKETAT WAKVVDQEEA  300
LLNLTHKALN ISTPDDDKQK SISQTSKLRT REKRKRGLLV EEKEDLFGLA NSDALLAMVP  360
ESSIINSGHG EISQQLPEWI TEEIQRSFQS YHAQTSNGGL GNYYGNESVI EHQFMFDDPE  420
ACGDQTSTHE QTSIWDLAYI P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-581763011126Protein ETHYLENE INSENSITIVE 3
4zds_B2e-581763011126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551LKAAKRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183639.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-121EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A1U7Y0I71e-154A0A1U7Y0I7_NICSY; putative ETHYLENE INSENSITIVE 3-like 4 protein
STRINGXP_009792280.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-115EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]