PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Basic Information? help Back to Top

TF ID

Itr_sc003718.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 170aa MW: 18821.6 Da PI: 9.4995

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003718.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	53.2	8.8e-17	108	166	29	87
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 ++ +hk+FGas v+kll +lp ++r a+ s+ eA+ar++dP+yG+v++i +lqqql Itr_sc003718.1_g00001.1 108 TTSTIHKVFGASSVSKLLLQLPVQQRFPAVFSIGIEAQARMEDPIYGCVSHIIALQQQL 166 56789****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.627	77	170	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-15	109	166	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MASGADSPYG ACKFLRWSTK RQFEISSTET RTNDLPSKGG HYMPIEHKIA MASGAGSPYG 60 RMQIPLPELR SRLDSVSNLP SHENDQSQFI LPNAYLNLSP SLPTLLPTTS TIHKVFGASS 120 VSKLLLQLPV QQRFPAVFSI GIEAQARMED PIYGCVSHII ALQQQLPWRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-14	110	166	41	97	LOB family transfactor Ramosa2.1
5ly0_B	1e-14	110	166	41	97	LOB family transfactor Ramosa2.1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	3e-22	lateral organ boundaries-domain 16