PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003658.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 338aa    MW: 37130.2 Da    PI: 6.8439
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003658.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31062e-3398205199
                              EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                              f+k ltpsdv+k++rlv+pk++ae++         gg  e++  l++ede g++W+++++y+++s++yvltkGW++Fvk+++L++g
  Itr_sc003658.1_g00001.1  98 FEKPLTPSDVGKLNRLVIPKQHAEKYfpltgqepgGGGAEKGLLLSFEDECGKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAG 183
                              99****************************9999966677999******************************************* PP

                              -EEEEEE-SSSEE..EEEEE-S CS
                       B3  78 DfvvFkldgrsefelvvkvfrk 99 
                              D vvF +++ + ++l+++++r+
  Itr_sc003658.1_g00001.1 184 DAVVFARHRADAERLFIGWRRR 205
                              ******88779999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-4187208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-3293205IPR015300DNA-binding pseudobarrel domain
CDDcd100178.11E-3096196No hitNo description
PfamPF023624.7E-3098206IPR003340B3 DNA binding domain
SMARTSM010191.8E-2698206IPR003340B3 DNA binding domain
PROSITE profilePS5086314.4198206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPVNHFTPEG FWLTKQHHLP APSNDNTPCN LAADSNSQFY HHHGGAGAAA MFAAQNTGYS  60
FNLNNRNEDE EESEEQQSKA AKEEEEEEMT IIPKEPLFEK PLTPSDVGKL NRLVIPKQHA  120
EKYFPLTGQE PGGGGAEKGL LLSFEDECGK TWRFRYSYWN SSQSYVLTKG WSRFVKEKRL  180
DAGDAVVFAR HRADAERLFI GWRRRNSSAV QDGNSGAGEA STVGGGGGWA PAWHPYPPPA  240
TPAAIPYQPN CLHAGSAAGV VPSQAGASGN SKRSVRLFGV NLECEPEPTT ADRSAQPGQH  300
QPFQYYANSH ASYNHMVRPI LITLILTNLK LRVVGNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-48942054113B3 domain-containing transcription factor NGA1
5os9_B8e-48942054113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153504.11e-171PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ9FNI34e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A1S3Y9D41e-98A0A1S3Y9D4_TOBAC; B3 domain-containing protein At2g36080-like
STRINGXP_009600245.18e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.28e-58B3 family protein