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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Itr_sc003639.1_g00001.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
LBD |
| Protein Properties |
Length: 216aa MW: 24112 Da PI: 9.3041 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc003639.1_g00001.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 100.6 | 1.5e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81
+C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++
Itr_sc003639.1_g00001.1 4 SCNGCRVLRKGCSDDCIIRPCLewiknPESQANATVFLAKFYGRAGLLNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLW 89
6************************************************************************************* PP
DUF260 82 klqqqleqlkaelallk 98
++++ql+q +++++l +
Itr_sc003639.1_g00001.1 90 SGNWQLCQNAVQAVLKG 106
*********99988765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MRLSCNGCRV LRKGCSDDCI IRPCLEWIKN PESQANATVF LAKFYGRAGL LNLINAGPQN 60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV QAVLKGDPVV PITSEAAAAT 120
NNEPPLKFCD IRHVNKDEMN CAASTDLHRV RTRCRFKKSG AKSRVRIGFS DEEVVCSTWV 180
EIKPSTSCLR DKVLFWVRIT LNIMFKGQSA EPPRQP
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