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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003521.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 471aa MW: 53626.2 Da PI: 5.0102 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1.1e-10 | 420 | 467 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 ++W+ E++ l +v+++G+g+Wk+I + + Rt+ ++k++w++ Itr_sc003521.1_g00005.1 420 KKWSLVEEDTLRTGVERYGKGNWKLILHAYRgifEERTEVDLKDKWRN 467 58********************************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 413 | 468 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.099 | 414 | 471 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-8 | 418 | 471 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-9 | 420 | 467 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.00E-18 | 420 | 468 | No hit | No description |
SuperFamily | SSF46689 | 7.65E-14 | 421 | 468 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MDIDPDISRW ILEFLLRNPL DDGTSNALIR VLPVNDNLGL KKTVLLRGME SEVSNGSVTE 60 KMLGLLEKFE ELEFQEGNQA LEELKAAYCA VAVDCTVRFL KKNGGEESSR GEYFSAVRRI 120 WRQRICRMEK ADTSGLVSEE LGNWRDAIEA AVWEDSFCDN VIKRSEEVDA VEAVQVFVKE 180 AKDRMGSSFL EYTAEMLTND NNLRELLLSE NREDKGETDG KNDNNMRELL PLENGEEQGE 240 IGGNDAALPS ASQDTAHHNN GRELRHSARK HTKAPLVGIS RGAKIADRDD LRAEAHKQYD 300 LPASPEVNKA QEALETSFME LRAVVKDPLP DALLEAASIM CQLSRRNMDD QPIQENASKR 360 SLMERNSTAH VHEWNDSFDN LPEVSGNREI RPQLPTPERR NISPLKKYEI NRLTKRRKAK 420 KWSLVEEDTL RTGVERYGKG NWKLILHAYR GIFEERTEVD LKDKWRNMSS S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 412 | 420 | LTKRRKAKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178808.1 | 0.0 | PREDICTED: uncharacterized protein LOC109173940 | ||||
Refseq | XP_019178809.1 | 0.0 | PREDICTED: uncharacterized protein LOC109173940 | ||||
TrEMBL | A0A484LJJ6 | 0.0 | A0A484LJJ6_9ASTE; Uncharacterized protein | ||||
STRING | XP_009587848.1 | 1e-140 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3774 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-18 | TRF-like 5 |