PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003487.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 162aa MW: 18063 Da PI: 8.7492

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003487.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.3e-09	15	60	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 E+ RR++++ +++L l a + +K+ + L +A++YIk+Lq Itr_sc003487.1_g00001.1 15 TEKHRRQQMKFLYDQLAAALSLA--SSEEKMPALDLLDQATDYIKELQ 60 69******************7..3999****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.407	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	13	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-5	13	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-6	15	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-11	15	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MKPEKSSSKP GRGLTEKHRR QQMKFLYDQL AAALSLASSE EKMPALDLLD QATDYIKELQ 60 KNIKELRTRK DNLGQPVAVD VSEHNMGALL EVNMVCGSEN KCLKMCKVLR VLEEEGAEVV 120 SATTSAVLDK ICLTILCKAF SSRLGIETKQ VQERLRNLVS GR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181310.1	5e-55	PREDICTED: transcription factor bHLH36-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13045	3	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	1e-20	bHLH family protein