PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003409.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 17982.6 Da PI: 5.9398 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.3 | 8e-08 | 13 | 42 | 12 | 41 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifs 41 f+k +n i+K + +S+LC+a+v +i fs Itr_sc003409.1_g00003.1 13 NFCKEQNAIMKRVSQISTLCAANVVMICFS 42 59**************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.222 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-6 | 7 | 45 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-8 | 9 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSGSEVTRSQ MENFCKEQNA IMKRVSQIST LCAANVVMIC FSICSQMFVS GDESIIDAFE 60 AETIISPQCT FECTTHKSPG FFKFLKWRNK NNSAFSSSAS SSCRKEKNCV KSPINPPTNI 120 DEFSDKLILP KIEQLEEKME GFKEIMNQQY LFLSAQQNV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191276.1 | 1e-76 | PREDICTED: agamous-like MADS-box protein AGL1 |