PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003335.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 429aa    MW: 48249 Da    PI: 9.6046
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003335.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73e-2496163255
                  G2-like   2 prlrWtpeLHerFveaveqLGGse..............kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              prlrWtp+LH +Fv+a+e+LGG+e              +AtPk +l+lm+v gL+++hvkSHLQ+YR+
  Itr_sc003335.1_g00002.1  96 PRLRWTPDLHLSFVHAIERLGGQEsslsyeqivhcnrvRATPKLVLQLMNVRGLSIAHVKSHLQMYRS 163
                              8*********************97566666666666667****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2692164IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1095164IPR009057Homeodomain-like
PfamPF002499.4E-797162IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.8E-10132165IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEAGEMQEKE KAPLSSETCS SESKGMASID LNSRMDGEDD DDEVEVMSAA DESEKTGGDG  60
NSENNSSSFS GGEGNVNGDD QKKSSSVRPY VRSKIPRLRW TPDLHLSFVH AIERLGGQES  120
SLSYEQIVHC NRVRATPKLV LQLMNVRGLS IAHVKSHLQM YRSKKLDASG QGQVKRGFKG  180
RSYGYGDMMN YRFIPHQHFK MQNGAIVLTR TFEDGRHQMG NNIARQSMFQ SPTYDLKTII  240
SRYQQRSSNQ ESVLVKLSGA AKMEDHREGN VLRMRMLPSS YAPKDHHQLQ YSPSNASHHQ  300
IFPIRPSQFL EEKRWPPRGS MANHLKEKPA AFTCGLWSNA AATPQPLLHH TIPAGTNSRF  360
SSLGPNFDPP FRRLEMMNKE KMSFKENGRL LDLQLRLSQS GDANNNNNNN GEKSYKKEGD  420
INTRLSLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1497165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1497165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1497165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1497165357Protein PHOSPHATE STARVATION RESPONSE 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176054.10.0PREDICTED: uncharacterized protein LOC109171416
TrEMBLA0A1J6I9L81e-77A0A1J6I9L8_NICAT; Putative myb family transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55162334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-34G2-like family protein