PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003322.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 1122aa    MW: 123124 Da    PI: 4.9968
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003322.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34e-06724744526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               Cr++++ G C+ G++CkF+H+
  Itr_sc003322.1_g00001.1 724 YCRHYQK-GRCHEGEKCKFSHD 744
                              6******.*************6 PP
2zf-CCCH17.48e-06779798625
                              -SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                              C++f  +G+C++G  C F+H
  Itr_sc003322.1_g00001.1 779 CKNFVSNGFCSRGVDCLFSH 798
                              ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.068718745IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112719746IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6720744IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4724744IPR000571Zinc finger, CCCH-type
SMARTSM003560.37748774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.723748775IPR000571Zinc finger, CCCH-type
SMARTSM003560.047776800IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.859778801IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MENFSELDRT KPSQNAFHFP PPHRRRTLMS ETYHTLIHIL SHCPTSSEPQ PSQQKQEETG  60
CSESGKVITA HGALVDQHME AEIKLVNDID HEKNKTHAIL HEMGDISEGQ IKDCIDLLDR  120
NDDAMEVNGE VPQKNGANNG ISSSLVDNSQ ASTLVLQSYN EQEDKSNTPE LQLGESDLVK  180
RQNMDKEISV HETCATMESC FMDEDNALTQ LVQSGEEKSH IAEKKVLEDT EHGLQLNEME  240
LQNLVDNNQA STLDHTDDAM DVNQKNGTNN GSGSLVDNNQ SSTLVLQLYD EQEDKSNTPE  300
LQVGESDIAK LQHMDKEISI HEACATIESC FMDEENELSQ VVQGGQEEGH AAENKLLEDM  360
EHELQLREME LQNLVDNNQA SILDPNDDAM EVNWEVPQKN GANGISTPLV DNNQAGTLVL  420
QLYNEQEDKS NDPESCFKDK KVSIHEACAT IESCFMDEDN ELILLVQSSE EKSHVAEKNL  480
LKGMEHGLQL KEMELQNLIS ASGAANSSVP ETVVEEIEEG EISGDAGVSD ESDGNMFEDT  540
VSLEQGHTHV SITAEKEFIL DVLDTKLQEK HVLTSFSNDS ADGCSNISKE LLGKKSEVQE  600
SDFEMVVCQK DVEKEKIDGF DNVIDSEIVN GQVDGVGKVD SSAACLALKT VSLENATKSK  660
GSVTDAELEV ANEGKRKKKR GPITKEKKAK KKCKERIKRA QKNIKLGVKR LKLPPIVKPK  720
TVSYCRHYQK GRCHEGEKCK FSHDIIPLTK SKACCHFARH SCMKGDDCPF DHQLSKYSCK  780
NFVSNGFCSR GVDCLFSHKV PAKTESSTPP IISKAELSSS LLPSSLSPKM QVNAHGSSQL  840
FPGKNTGHTV GDTVQKLAVR APKGVSFLTH GKLPVGDTNH KEFGSSLKEG DPGKFNQEEI  900
HSKSDNSQMP NDVIKGPTSR IPHGINFLSL GRAPLTDSSS KTIPSFLNRG YRIEKLQLDE  960
FSKGKDTASS PRIGDSCTNE MTTRTPPKSM PRGISLLAFG KVSLDVTSST EQAVICNKEY  1020
KTASPVVQGI QGSLSRLGGS REMHFKFESS SFPSYQLLGQ SAVEHSEGIA NSSKTTFLPI  1080
PSSAQKALQS TLAFAAKFES GIKLDQSIGG ASVASSNIKE HR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173421.10.0PREDICTED: uncharacterized protein LOC109168999 isoform X1
TrEMBLA0A328DIK90.0A0A328DIK9_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720