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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003311.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 697aa MW: 77002.5 Da PI: 9.6247 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 590 | 639 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ Itr_sc003311.1_g00001.1 590 RRPFSVTEVEALVEAVEQLGTGRWRDVKMRAFdnvDHRTYVDLKDKWKTL 639 678999********************9766667999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.5E-7 | 391 | 480 | IPR029071 | Ubiquitin-related domain |
CDD | cd01769 | 0.00227 | 400 | 466 | No hit | No description |
PROSITE profile | PS51294 | 17.326 | 585 | 644 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-7 | 589 | 642 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 590 | 640 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 8.74E-17 | 591 | 641 | No hit | No description |
SuperFamily | SSF46689 | 7.1E-16 | 591 | 672 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MVMKKRLEYG FDGYRFPVVP RAPRSSRRRH TGNVDDKQIC AFELLAAVAG KLLLESESSV 60 SSNAAEGKDG PAIQRDVTEP GNFQEDKALK PECLDRGSCV ESAFLPKGAI QEQKIKHGNG 120 GSSYSENSSV SESTFTEFSG KVYSGVKLES VKNLDAEGNF NSEVEGRPSN LGDLCSVKIN 180 NATQKQLADD GMQAGDVTMA SGSSVKDPIK NYLTTTNKNT LNNSDRSVQM PLYRDPVPSA 240 SFAKHRRNDV KLGIRDDDEN SFRCFKRSTK IRAFRHRSHN GYRRIRKLLT SRRWQVAPGL 300 KECEFFNSYK AMRPYGNRKR TYAHQRRHFE KAPKRRKLCS RSFAIAYDQE VSSESISNLP 360 EKQTNGDNYG SALIAHRGIG TTASVKGLQN PKDPNVKFSI KSFRVPELYI EVPETTTVGS 420 LKKTVMDAVT TILGGSLRVG VILHGNKVRD DNRTLEQAGI SHNGDLDALG FTLEPNSSQV 480 SSSLPPKDPP ASLLAAAEKE LSGNPASPNL DLALLAIPPD PSPEFKLDKH DESNHESVPL 540 LEGPTDASRN VVGPESQALV AVEQTNAEPL AVVPMNQKSR RAEFSQRRTR RPFSVTEVEA 600 LVEAVEQLGT GRWRDVKMRA FDNVDHRTYV DLKDKWKTLV HTASIAPQQR RGEPVPQELL 660 DRVLAAHSFW SLQQAKQNGK AEAVVRIGDA PAQVVEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 2e-60 | 574 | 697 | 1 | 121 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 317 | 336 | RKRTYAHQRRHFEKAPKRRK |
2 | 330 | 336 | KAPKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171935.1 | 0.0 | PREDICTED: telomere repeat-binding protein 2-like | ||||
Refseq | XP_019171936.1 | 0.0 | PREDICTED: telomere repeat-binding protein 2-like | ||||
TrEMBL | A0A328EAK6 | 0.0 | A0A328EAK6_9ASTE; Uncharacterized protein | ||||
STRING | XP_009783131.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2093 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 3e-91 | TRF-like 2 |