PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003308.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 439aa MW: 48150.2 Da PI: 7.364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003308.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	270	317	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Itr_sc003308.1_g00001.1 270 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 317 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-17	264	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.60E-10	264	321	No hit	No description
PROSITE profile	PS50888	15.682	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-17	266	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	270	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MEKDSMFLSD ESTIMPYGIG IQANELHNCF FNPNWESPMD QRDLLGSSLS SMVSSPSNGG 60 NGNFVLRELI GRLGEISPSY ADNTPLSSPP KLSNNISMVD HHQGQIRATL PFPQFSTDPG 120 FAERAAKFSC FANGAGMMSP GLKEPELQHR MAHNLETGKL SRVPSNQSIK ASGSQMAEKS 180 ELGDSRENSS VSEQIPGGET ANSRKRKAAP KEKGKETTNV ASENKESNAK RNKAEEDANK 240 KQNSKDNPKP PEPPKDYIHV RARRGQATDA HSLAERVRRE KISERMKLLQ DLVPGCNKVT 300 GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPAMESNMGA LLSKDIILQS RGSVHHNMFP 360 TDASYGQNLH SVMSSITPLN RNLGMALPPL MGNFVENPSQ VSTLFENDLN NVVQMCIGQN 420 QAENVHGNMT TGAQMKVEI

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MEKDSMFLSD ESTIMPYGIG IQANELHNCF FNPNWESPMD QRDLLGSSLS SMVSSPSNGG  60
NGNFVLRELI GRLGEISPSY ADNTPLSSPP KLSNNISMVD HHQGQIRATL PFPQFSTDPG  120
FAERAAKFSC FANGAGMMSP GLKEPELQHR MAHNLETGKL SRVPSNQSIK ASGSQMAEKS  180
ELGDSRENSS VSEQIPGGET ANSRKRKAAP KEKGKETTNV ASENKESNAK RNKAEEDANK  240
KQNSKDNPKP PEPPKDYIHV RARRGQATDA HSLAERVRRE KISERMKLLQ DLVPGCNKVT  300
GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPAMESNMGA LLSKDIILQS RGSVHHNMFP  360
TDASYGQNLH SVMSSITPLN RNLGMALPPL MGNFVENPSQ VSTLFENDLN NVVQMCIGQN  420
QAENVHGNMT TGAQMKVEI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179881.1	0.0	PREDICTED: transcription factor bHLH78-like isoform X1
TrEMBL	A0A1U7XQA2	1e-146	A0A1U7XQA2_NICSY; transcription factor bHLH62-like
STRING	XP_009627868.1	1e-149	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-76	bHLH family protein