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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Itr_sc003236.1_g00002.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
M-type_MADS |
| Protein Properties |
Length: 139aa MW: 15623.1 Da PI: 10.4005 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc003236.1_g00002.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 68.4 | 6.6e-22 | 21 | 70 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien+ r vtfskR + ++KKA+E+S+LC++e+a+++fs++gk +++s+
Itr_sc003236.1_g00002.1 21 RIENEVHRLVTFSKRCTSLFKKASEMSTLCGTEIAMVVFSPSGKPFTFSN 70
9***********************************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 139 aa
Download sequence Send
to blast |
MSLRNTSRGV TRGRHRVLLA RIENEVHRLV TFSKRCTSLF KKASEMSTLC GTEIAMVVFS 60
PSGKPFTFSN PDMDTVLTKY FGEIPTTDAN IIRPIIHAHQ EAKMRAMTSQ INILEAQIDE 120
EMLVNQALRE AKKGRSSIA
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3kov_A | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_A | 5e-17 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 5e-17 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 5e-17 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 5e-17 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 1e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
