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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc003191.1_g00003.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 267aa MW: 30241.3 Da PI: 8.5459 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 32.8 | 1.3e-10 | 90 | 141 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+ h +ErrRR+++ + ++ Lr+llP + + k+ s +e + Av+YI ++
Itr_sc003191.1_g00003.1 90 KIVHRDMERRRRKEMATLYSSLRSLLPVeYF--KRKRSSASEYMQAAVNYIEQM 141
6679************************885..6667**************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 2.09E-7 | 86 | 146 | No hit | No description |
| PROSITE profile | PS50888 | 12.144 | 88 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 9.03E-12 | 89 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.9E-9 | 89 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.4E-8 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 0.0081 | 94 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 267 aa Download sequence Send to blast |
MFPLQRCSDE LAYQILSDPH PHLPCQQNTI SEDLILDFDY TSNCCPLLET NNHNSNVNNC 60 SSSSSRKRKQ KAAVFVAANT HPEKDEKLKK IVHRDMERRR RKEMATLYSS LRSLLPVEYF 120 KRKRSSASEY MQAAVNYIEQ MHTNLKELER SRRGHGCSSS SPSPGYVSVN GCRDGGLEIL 180 VDTSCKVEER FPLSTLLRTL LNEGVEVESC VSTTTSHGRL LHKLHSKVCG EISVDVGGLQ 240 QKLNGVLNAF QRLRYVGTEY QIRYALS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 64 | 69 | SRKRKQ |
| 2 | 97 | 102 | RRRRKE |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA598 | 24 | 109 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25410.1 | 2e-19 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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