PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003191.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 299aa    MW: 33693.4 Da    PI: 6.5874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003191.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10121171153
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                              +r+ h  +Er+RR+++ + ++ Lr  lP       ++K s ++ + +Av+YI +
  Itr_sc003191.1_g00002.1 121 KRVIHRDIERQRRQEMANLYASLRVQLPLeY---LKGKRSTSDHVMEAVNYIED 171
                              7999*************************77...9*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-12117187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-8119177No hitNo description
PROSITE profilePS5088811.922120172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-10121188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-8121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MRMDNFHHQN PFFPSQQNNE DYSELFSAPH TTTQTHDENA PFLFHQQDPT LLQHQDLQFD  60
VGYLELDDPV AAAAALEVSN YPAPDNVNAA PRNKGKKKQQ KPWAAAGRGQ GESSASDGKQ  120
KRVIHRDIER QRRQEMANLY ASLRVQLPLE YLKGKRSTSD HVMEAVNYIE DKQKSIRELE  180
EKRDRLKRLG SSGSDVVEED YNRRTGNSSS SAAAPAMVTV QTCLDGVEIF INSGFPNQGF  240
RISRALDLLV QQGHHVLSCV CSRVDDRLLH TIRVQVSPQA GVDLQALQQN LSDSINQLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120132KRVIHRDIERQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191786.11e-175PREDICTED: transcription factor bHLH118-like
TrEMBLA0A484LVY23e-76A0A484LVY2_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.17e-35bHLH family protein