PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003191.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 959aa    MW: 106627 Da    PI: 7.3296
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003191.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix285.6e-091942522281
                 trihelix  22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              +rgk ++ + +ev++++ ++g++r +k+   kw+n+ ++++k+ e+e++++ e+    +y
  Itr_sc003191.1_g00001.1 194 GRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQM-GKSY 252
                              57788999999*************************************9954443.4445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF558955.65E-5555638IPR001568Ribonuclease T2-like
CDDcd001802.40E-11796944No hitNo description
SuperFamilySSF561121.78E-14812943IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.102.3E-6813946No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0033897Molecular Functionribonuclease T2 activity
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MVDNKGETTK KTQHHAHLSA SSDDPADQDP AEDPPQAVVS GASHYVSPTL YIPAESVNPK  60
RPRYAVAASA SQWKPIPSSS SQPKPSMLSS ESTPSPSANP QPGHGHAAAS SSNTASSPSH  120
SPRPSHSGQE ANKPSEMEHF PQQHHQFRKG KYVSPVWKPN EMLWLARAWR VQYQGGSSEL  180
QGEGGEVTTV TPPGRGKTRA DKDREVAEFL NRHGVNRDAK TAGTKWDNML GEFRKVYEWE  240
RGGEREQMGK SYFRLSPYER KIHRLPASFD EQVFEELSQF MGPRMRTPQT TRGGVAQLIS  300
TGDALIMPPK SLPPPHPFRD EELSQLPGAR AAKQLVLASG EGIIHGGTRG MLGFEASMEG  360
GAVGVGASLS SSSSTKQVRR IGKIRMIWEE SVSIWAEEGE HHRGRVKLPG SSFLNADELA  420
FLDDSMVAST METFEDGPLK GFSVDRFISG QHLKVFGRRK PSLPPPPASS ERFQLHSMEP  480
SIRSITPWEF QDPTEYYVGC LRVPPPSLPC LFELSWYLQE PPPEELRFPL RKDVYRDLPQ  540
GKELFFTTST ELLDCRGISF DVLSSVMRSN PSLCASTSAC RDSFIGLWDD CINRMVSKFC  600
SQEMVFIRKS SSSLAETVED QWPNVTAFIR NFCLWRGEET DQLREGHLDP SSTLVEKIMW  660
TYADVPYVLG YYAVGFVVTF CALSRLQDRI IRTDLYTVDL STPSERLKAL VPCWRIAGVL  720
PLLADRCSVG IGNGYNKVLP YGDFERSDLG NGNIIEMTPN SVVRYFSSRR KWAAIKEIYD  780
FLDHRIPHAE FIVRSSEKDL ALVLKPRGCR FRPGNCDQLV EALKHVTKAL VALHDLSFMH  840
RDLGWDKVMR RSDREDGEWF VTGFDEAVGA PQINAHGGAA ASGRHAPEMG RGLHGVKVDV  900
WGVGQLVKTS GLVGVPKLLR ELQNRCLDHN PEQRPTAADC YHHLLQLQSS MSSAASGGY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191751.10.0PREDICTED: uncharacterized protein LOC109186283
TrEMBLA0A2G3CVZ10.0A0A2G3CVZ1_CAPCH; Uncharacterized protein
STRINGXP_009775235.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129361416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-07Trihelix family protein