PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Itr_sc003141.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 113aa MW: 12825.9 Da PI: 8.2497

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003141.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.8	2e-14	61	108	91	137
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpe 137 +k + +aN+aI e +e++++vHiiDf + ++QW aL+q L+ +R++ Itr_sc003141.1_g00001.1 61 PKWLFRVANHAIIETMERNKMVHIIDFHLADPTQWRALFQDLSaDRKG 108 5667789***********************************945543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.037	1	113	IPR005202	Transcription factor GRAS
PROSITE profile	PS51257	5	1	29	No hit	No description
Pfam	PF03514	7.1E-12	61	108	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MGRLPYERLL LMLLDNGTAL ILPPISCSCT VASSTSIYNT ELAWEMQPGP KPRKFEMASS 60 PKWLFRVANH AIIETMERNK MVHIIDFHLA DPTQWRALFQ DLSADRKGSH ISA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	7e-09	scarecrow-like 3