PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003031.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22243.9 Da PI: 10.2645 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.1 | 7.2e-16 | 137 | 176 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 krie+k +r++tf+k r+g++KKA+EL+ C+ae+avi f Itr_sc003031.1_g00001.1 137 KRIEDKAKRHTTFTKGRQGLFKKASELCKRCNAEAAVITF 176 79************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51184 | 13.209 | 72 | 196 | IPR003347 | JmjC domain |
PROSITE profile | PS50066 | 20.395 | 129 | 189 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-16 | 129 | 188 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-12 | 131 | 151 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-17 | 131 | 194 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-15 | 138 | 183 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-12 | 151 | 166 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-12 | 166 | 187 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
SRKYTLHGFE KMAGRRAARK YGISGCLPAS HLEKQFWEEM SGGGRGKKEM VEYGINIDGS 60 AFSSSVNDPL GASNWNLNKL KQLPRSMFRL LENKIPGLTD PMLYIGMLFS MFAWHVEDHY 120 LYRPEDLIMV RTKVEIKRIE DKAKRHTTFT KGRQGLFKKA SELCKRCNAE AAVITFLLVG 180 NAFAFGYPSV NVVLAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 1e-47 | 2 | 122 | 95 | 212 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 1e-47 | 2 | 122 | 95 | 212 | Arabidopsis JMJ13 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me3 and H3K9me2. No activity on H3K4me3, H3K9me1, H3K27me2 and H3K36me3/2. Involved in the control of floral organ development by demethylating H3K9me3 and H3K9me2 in the promoter regions of DH1 and MADS47. The 'Lys-9' demethylation of these two genes is required for induction of their expression. {ECO:0000269|PubMed:18765808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019184182.1 | 1e-74 | PREDICTED: lysine-specific demethylase JMJ706-like | ||||
Swissprot | Q336N8 | 5e-44 | JM706_ORYSJ; Lysine-specific demethylase JMJ706 | ||||
TrEMBL | A0A1U8G8T3 | 3e-49 | A0A1U8G8T3_CAPAN; lysine-specific demethylase JMJ706-like | ||||
TrEMBL | A0A2U1KLB7 | 3e-49 | A0A2U1KLB7_ARTAN; JmjC domain, JmjN domain, Zinc finger, C5HC2-type | ||||
STRING | Solyc03g097090.2.1 | 3e-50 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 2e-16 | C2H2 family protein |
Publications ? help Back to Top | |||
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