PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003012.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 337aa    MW: 37743.2 Da    PI: 8.007
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003012.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.82.9e-1818105278
                 trihelix   2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                              Wt qe+++Liea+r ++er  r++             + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + ++ 
  Itr_sc003012.1_g00003.1  18 WTVQETMVLIEAKRMDDERRMRRQagessggergkPTELRWKWVEDYCWSNGCLRSQNQCNDKWDNLMRDFKKVREYERRVSGDDN 103
                              *************9766666654334455555555999*****************************************9865444 PP

                 trihelix  77 st 78 
                              ++
  Itr_sc003012.1_g00003.1 104 KS 105
                              32 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0271085IPR017877Myb-like domain
PfamPF138372.1E-1217110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEVVVSSNVM REYRKGNWTV QETMVLIEAK RMDDERRMRR QAGESSGGER GKPTELRWKW  60
VEDYCWSNGC LRSQNQCNDK WDNLMRDFKK VREYERRVSG DDNKSYWKLE RNERKENNLP  120
TNMLREIYEA LVEVVDRKGQ RVVVGVGMGV GGGSASASTS GFIPQHLPPP MQQSPLEAQI  180
AALPLPPPPP PTAAAAAAQT PPLHYQHQPH CTTQPFPRVD PDTSEHSDSP AKRRRMGEGT  240
SGTQTSGGGN MNSHQEVGPA ISRSAALIAE AIQSSEEREE RRHRELLSLH ERRLQIEESK  300
AEINRQGING LVDAINRLAN SILTLATNNN QPGPPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13039RMDDERRMRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150518.11e-165PREDICTED: trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A068VA121e-129A0A068VA12_COFCA; Uncharacterized protein
STRINGSolyc02g030460.2.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-63Trihelix family protein