PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc002986.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 794aa MW: 87760.9 Da PI: 6.7109

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002986.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	611	643	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gLt +qV++WF N R + Itr_sc002986.1_g00002.1 611 HPYPTDTDKHMLASQTGLTRNQVSNWFINARVR 643 89*****************************87 PP
2	BELL	81	1.6e-26	476	530	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 V++rY+qy++q+q+v+ssFe vagl +a+pY+s+Alka+Sr+Frc k i++q+ Itr_sc002986.1_g00002.1 476 SVCRRYRQYHQQMQMVVSSFESVAGLSAATPYISVALKAVSRQFRCFKSTISDQL 530 79**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.8E-28	338	528	IPR006563	POX domain
Pfam	PF07526	9.5E-36	343	527	IPR006563	POX domain
PROSITE profile	PS50071	11.758	584	647	IPR001356	Homeobox domain
SMART	SM00389	9.4E-9	587	651	IPR001356	Homeobox domain
CDD	cd00086	2.97E-11	587	648	No hit	No description
SuperFamily	SSF46689	7.7E-17	589	653	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-28	590	651	IPR009057	Homeodomain-like
Pfam	PF05920	7.8E-18	604	643	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MEMRNHGPEF HVVQQSRRDK LRNQNTSTPS HHMGDYRANL EHLSLHQGLN MDLVHHLPGW 60 RYGNISCDSS SSVLSSDMLN FASNPHSLVL NKDNNGDPQN CGTWKSVDLS HKIGSVWSGV 120 ANYSSGSAGI DGGNLGPMFV GENLSGSLRL NNDVPVSGID VKTSYFGYQE LQPSSDTSGQ 180 YKDIQNLQEV VTSAAVGTRE LEMLQNARET ERSTSWLPAG EEDETRLLPA YVDQSSQLFV 240 NTNAASLVNS AVQWNGELER DNRAIENEAS NTQALSLSLS SVGERISSGM PDLKPLKSDH 300 LCSYPKQGSK ALGNAARQDM AGNLTFTHRD LVPLGPFTGY ATILKSSRFL RPAQQLLYEF 360 CNFTGDKALN LSEVSGNNVM DEVGISSEAV NATPRSGGGS LAVDSGASSS TFYSSNEKSS 420 HEFRGMSSSN ESYPRPEYLQ NKVKLLYMQD EVSRKSSFFW DSSDVFLVCE VMLTISVCRR 480 YRQYHQQMQM VVSSFESVAG LSAATPYISV ALKAVSRQFR CFKSTISDQL RSIRKALGED 540 VLSPTGASSS KRDAGGASGM KFIDQTLQNQ NGSGERLHYL EPQTHVWRPQ RGLPERAVAI 600 LRAWLFDHFL HPYPTDTDKH MLASQTGLTR NQVSNWFINA RVRVWKPMVE EIHMLETKAI 660 VEKGSNVGKA DGELGTQGRQ LGLPNESQFL NARAIPDECP PGISPSIIRE KSYQDMWNQD 720 KRSRIDCGQL PVGMGFMPYQ RNSLEIGGLG AVSLTLGLRQ SIEGAQQQQQ QQMQQHESQL 780 RQQFGGQIIR DFAG

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MEMRNHGPEF HVVQQSRRDK LRNQNTSTPS HHMGDYRANL EHLSLHQGLN MDLVHHLPGW  60
RYGNISCDSS SSVLSSDMLN FASNPHSLVL NKDNNGDPQN CGTWKSVDLS HKIGSVWSGV  120
ANYSSGSAGI DGGNLGPMFV GENLSGSLRL NNDVPVSGID VKTSYFGYQE LQPSSDTSGQ  180
YKDIQNLQEV VTSAAVGTRE LEMLQNARET ERSTSWLPAG EEDETRLLPA YVDQSSQLFV  240
NTNAASLVNS AVQWNGELER DNRAIENEAS NTQALSLSLS SVGERISSGM PDLKPLKSDH  300
LCSYPKQGSK ALGNAARQDM AGNLTFTHRD LVPLGPFTGY ATILKSSRFL RPAQQLLYEF  360
CNFTGDKALN LSEVSGNNVM DEVGISSEAV NATPRSGGGS LAVDSGASSS TFYSSNEKSS  420
HEFRGMSSSN ESYPRPEYLQ NKVKLLYMQD EVSRKSSFFW DSSDVFLVCE VMLTISVCRR  480
YRQYHQQMQM VVSSFESVAG LSAATPYISV ALKAVSRQFR CFKSTISDQL RSIRKALGED  540
VLSPTGASSS KRDAGGASGM KFIDQTLQNQ NGSGERLHYL EPQTHVWRPQ RGLPERAVAI  600
LRAWLFDHFL HPYPTDTDKH MLASQTGLTR NQVSNWFINA RVRVWKPMVE EIHMLETKAI  660
VEKGSNVGKA DGELGTQGRQ LGLPNESQFL NARAIPDECP PGISPSIIRE KSYQDMWNQD  720
KRSRIDCGQL PVGMGFMPYQ RNSLEIGGLG AVSLTLGLRQ SIEGAQQQQQ QQMQQHESQL  780
RQQFGGQIIR DFAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	593	650	1	58	Homeobox protein Meis1
4xrs_B	3e-16	593	650	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175553.1	0.0	PREDICTED: BEL1-like homeodomain protein 8 isoform X1
TrEMBL	A0A068UHG5	0.0	A0A068UHG5_COFCA; Uncharacterized protein
STRING	XP_009615825.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8720	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	6e-69	BEL1-like homeodomain 8