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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002970.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 142aa MW: 15650.6 Da PI: 7.4638 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 78.6 | 8.3e-25 | 44 | 89 | 4 | 50 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHR 50 +rY+eClkNhAas+Ggh+v GCg fmps geegt +alkC AC+CH Itr_sc002970.1_g00007.1 44 IRYRECLKNHAASTGGHVVNGCGKFMPS-GEEGTLEALKCVACNCHS 89 79*************************9.999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.0E-23 | 44 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-16 | 44 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.6E-23 | 45 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.568 | 46 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.94E-5 | 106 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 111 | 142 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MHEGPSNPDP DPDPDPDLSL LNNKATTQQV LPQRFVDTDP TTLIRYRECL KNHAASTGGH 60 VVNGCGKFMP SGEEGTLEAL KCVACNCHSK GIRPESSSED LNAGGGQGLM QVLSSKKRFR 120 TKFTQQQKQQ MHEFAEKIGW RI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019182448.1 | 4e-58 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Refseq | XP_019182449.1 | 4e-58 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9ZPW7 | 4e-31 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2P5YQH9 | 2e-35 | A0A2P5YQH9_GOSBA; Uncharacterized protein | ||||
STRING | scaffold_304185.1 | 2e-35 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1105 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 4e-23 | homeobox protein 24 |