PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002967.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 364aa    MW: 40511.9 Da    PI: 7.7381
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002967.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.47e-2577120144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Itr_sc002967.1_g00007.1  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120
                              79***************************************987 PP
2QLQ60.74e-21943236
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                             +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll  i+
  Itr_sc002967.1_g00007.1  9 PFTATQWQELEHQALIYKYMVSGMPVPPDLLYSIR 43
                             8******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.5E-12844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-16942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.364944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32577121IPR014977WRC domain
PfamPF088793.4E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNNGRSRLPF TATQWQELEH QALIYKYMVS GMPVPPDLLY SIRRSLDSSL SSKLLLHQTP  60
QHMGWSCFQM GFGKKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE  120
VIPTSSAAAA PSTPPPPTAI PFSSINKNTP TPPSLLYPHS TPSRSHQGIA LSSQDHTANF  180
LLDSVAYSRN NGYGHGMKDE VDEHVFFSSE GSGSIRSSIS GSNNSVDDSA WQLAPLTMAS  240
PPLGQLKQRD YCGPQNGYSS YLHLHEASSR QQRQGEGDEG EEGGGEDYYG LGSGGSKTGV  300
GMMINPEDQQ QQPKKVMHHF FDEWPKENKD SWLDSGDKYS ARGPHLSISV PNSSHDFFIT  360
HNEK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826621e-48AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173386.10.0PREDICTED: growth-regulating factor 1-like isoform X2
TrEMBLA0A484LXQ91e-158A0A484LXQ9_9ASTE; Uncharacterized protein
STRINGXP_009767378.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-49growth-regulating factor 5