PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002864.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 379aa    MW: 42375.7 Da    PI: 7.5721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002864.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08175222455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Itr_sc002864.1_g00001.1 175 SHSLAERVRREKISERMKILQGLVPGC----DKVTGKALMLDEIINYVQSLQ 222
                              8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-15169233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-10169226No hitNo description
PROSITE profilePS5088815.389171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15171231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6175222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAAFPSYQCL LDSTSSVFLQ PNSPPIYKMP SGTFLDEPND SFSQFYQSES LQELSTVSHG  60
LVSHSHHHHN NNINEFSPSP SSSVTNKPES GEQLTYQSPP LMPKKRKSKQ DSSMNSAQSK  120
NVKEGEEGKR QRKGGNGNAV KEGKEKKTKE DKKCPEEAPT GYIHVRARRG QATDSHSLAE  180
RVRREKISER MKILQGLVPG CDKVTGKALM LDEIINYVQS LQNQVEECRE NLAVQSYSKY  240
SAIFQKFARS HVKFLSMKLA SVSPMFYDYG MDLDTLMVRP DQEMNIQRVN GLTFPMPNVQ  300
QCNPTTTHTP SAVVSDANTV LTIPTSPPNC DDFSLLDCPS APPLFQQPPH ILNNNLFNQT  360
MNKGQEATSM EAKELKEQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189378.10.0PREDICTED: transcription factor bHLH137-like
RefseqXP_019189379.10.0PREDICTED: transcription factor bHLH137-like
RefseqXP_019189381.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A0B5E9533e-78A0A0B5E953_CAPAN; Transcription factor Upa20
TrEMBLA8TLW54e-78A8TLW5_CAPAN; BHLH transcription factor Upa20
STRINGcassava4.1_023959m3e-76(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-46bHLH family protein