 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc002834.1_g00001.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
bHLH |
| Protein Properties |
Length: 369aa MW: 41521.8 Da PI: 4.8379 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc002834.1_g00001.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 33.9 | 5.6e-11 | 202 | 245 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + +++ +iL +++Y+k+L
Itr_sc002834.1_g00001.1 202 LMAERRRRKRLNDRLSMLRSVVPKiS------RMDRTSILGDTIDYMKEL 245
589*********************66......9***************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MEYYESGFLE ELLSLRSDDS WESCFPVGMN IVHNDDEVYC NNNYNVISGN IIDLDYEGKN 60
PSPLPSSSIT ASFDHGCSNF PPFDRYTLMS CYSFDGEFYT PLPFGDELSP PLTADSSNTK 120
IDTPPPPPVA AFRSGQENLS AILDEVTNCF HHQQNLEALE IGCKVEAVHH QSCGGERPSG 180
GGMLPEKRSK VRNPHGQPSK NLMAERRRRK RLNDRLSMLR SVVPKISRMD RTSILGDTID 240
YMKELLEKIK NLQGEMEMGQ NQLSQNTIFK DVKPNEMLVR NSPKFDVQRR GESDTKIEIC 300
CAGKPSLLLS TVNTLESFGL EIQQCVISCF NEFAMQASCT EAMEHREILS EEDIKQQLFK 360
NAGYGGRCL
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 204 | 211 | ERRRRKRL |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
|
