PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002824.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 339aa    MW: 38802.3 Da    PI: 7.3796
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002824.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.41.9e-2372153285
                 trihelix   2 WtkqevlaLiearremeerlrrg..klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              W++qe+++ i++r e+e+++ ++  +  k+lWe v++km+e g++r+++qCk+kw+nl +ryk  ++++ +    s ++cp+f++l
  Itr_sc002824.1_g00001.1  72 WSNQETRDFIAIRAELERDFASAkrSTSKALWEVVAAKMKELGYRRTAEQCKCKWKNLVNRYKGKETSDAD----SGRQCPFFEEL 153
                              *********************7522688************************************9999998....4678*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.71264130IPR017877Myb-like domain
SMARTSM007175.9E-468132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-471132IPR009057Homeodomain-like
PfamPF138375.9E-2371155No hitNo description
CDDcd122031.70E-2272137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MFGRSGGAGN GSGGGSESLG GGGGQFRHHQ TMLPPLPLHL RPTVPIASTA GAGGVLGGDD  60
EFPRRDERVP PWSNQETRDF IAIRAELERD FASAKRSTSK ALWEVVAAKM KELGYRRTAE  120
QCKCKWKNLV NRYKGKETSD ADSGRQCPFF EELCAVFTAR ENNMQQLQLE SEVGPQRGRK  180
RVRSADQSSE EFSEEEEDNE YESDDDRVTT GSVASKKKAQ KEKRPRTTAT DKSSKNPASD  240
RGNRSTLEGI HELLCNFIQQ QLRIEMQWRE SMEKCSKERE LFEQEWRQTM EKLEKDRIML  300
EQAWREREEQ RRIREESRAE KRDALLTMLL NKLINENQP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190118.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A328E1V51e-141A0A328E1V5_9ASTE; Uncharacterized protein
STRINGXP_009614205.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.18e-34Trihelix family protein