PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002759.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 165aa    MW: 18784.9 Da    PI: 9.4786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002759.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-091765855
                             HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                             +E++RR++ +  +++L +l+ +      +kK s  + L +A++YIk+L+
  Itr_sc002759.1_g00003.1 17 AEKQRRQKQKGLYAQLASLVVSgENCLEKKKFSVLDLLDQATNYIKQLE 65
                             8*********************988889999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.439964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-111283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-111385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-51570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-51666No hitNo description
PfamPF000109.6E-71665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
METNPSFRTP KAGRHLAEKQ RRQKQKGLYA QLASLVVSGE NCLEKKKFSV LDLLDQATNY  60
IKQLEKHINE LKARMDSLQV PVEIAVKESE TLLEINIVCG SENKKVKMHK VIRILEEEGA  120
EVVSASFSTV DLKIYHTILC KAFLPRLGMD ITMVQQRLKN FISDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181399.12e-92PREDICTED: uncharacterized protein LOC109176424
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.16e-24bHLH family protein