PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002632.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 238aa    MW: 26041.7 Da    PI: 8.5836
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002632.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.73.7e-284107199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+ll+a+p+  r+++++sl+yeA  r+ +P  G++g+++
  Itr_sc002632.1_g00002.1   4 SCNGCRVLRKGCSQNCSIRPCLqwiksPESQANATLFLAKFYGRAGLLNLLNAAPDRLRPEVFKSLLYEASGRIVNPLFGSTGLLS 89 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelallke 99 
                              +++++l+q++++++l ++
  Itr_sc002632.1_g00002.1  90 TGNWELCQKAVDAVLKGA 107
                              **********99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3223109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSQNCS IRPCLQWIKS PESQANATLF LAKFYGRAGL LNLLNAAPDR  60
LRPEVFKSLL YEASGRIVNP LFGSTGLLST GNWELCQKAV DAVLKGAPIT PVASDASAAA  120
VLPLKACDIG HVHYKEGNRG KSGDLHRVRN RGRFKRAGAK IKENSVLTGS SDEEMNRSTS  180
HESSLCHQSP AANEEPESRE IQRLNSVEIS QPALDVRHVD FDDEIELELT LGFAPKVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173178.11e-156PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8861e-72LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S3XA612e-97A0A1S3XA61_TOBAC; LOB domain-containing protein 41-like
STRINGXP_009607764.13e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-69LOB domain-containing protein 41